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So if you are building ships, here are the best weapons.
Particle beam is your best choice since it damages both Shield and Hull.
Vanguard Obliterator Autoprojector. You gain access to these once you complete the Vanguard questline. They are only 2 power so you can actually mount 6 of these on your ship. Also they are class A so you don't need super starship design skills to use them.
PBO-175 Auto Helion Beam. This is a Class B weapon and you need Starship design 4 and level 48. uses 3 power so you can mount 4
For your 3rd weapon I would recommend a Turret Particle Beam. All the good Turrets are Class C weapons though. I run the PBO-300 Auto Alpha Turret
So the first 2 I listed are manual firing but they have a very fast fire rate. So you have 10 weapons firing along with the 4 other turrets and you just melt stuff. You don't have to go into multiple different Laser Beam, Projectile or Missile Skills and just stick to Particle Beam and venture into turret weapons later on.
I believe Reddit has a DPS Calculator for weapons system and those stand out.
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